You are encountering a problem known as impedance matching. This is a known
problem with the Apple Scanner. The situation occurs when the impedance
created by a combination of devices and terminators on the SCSI chain causes
one device to be "lost" on the chain.
Change the impedance of the SCSI chain by adding one or more terminators, SCSI
devices, and/or additional SCSI extender cable, and the device will reappear.