You have an issue with impedance matching.
This is a known situation with the Apple Scanner. It occurs when the impedance created by a combination of devices and terminators on the SCSI chain causes one device to be "lost" on the chain.
There is no official service procedure. A workaround is to change the impedance of the SCSI chain by adding one or more terminators, SCSI devices, or an additional SCSI extender cable. The device in question should reappear.